Darpa Progress Report April 25, 1999
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We have developed an approach to DNA computation in which we 'write' on
circular double stranded DNA molecules (plasmids) using biochemical processes.
We have now confirmed in the laboratory that we can carry out three of
our 'write' operations in sequence - and then 'read' the result. This preliminary
laboratory work is reported in paper #2 below, where it is also explained
how we plan to solve several hard algorithmic problems by these means.
New theoretical results concerning the splicing operations used in our
laboratory work have been obtained.
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Papers written since Aug.1998 (three others have appeared in print since
Aug.1998):
T.Head, Circular suggestions for DNA computing, in: Eds. M.Gromov &
A.Carbone, Pattern Formation, World Scientific (invited paper -
to appear) (abstract,
dvi
or postscript).
T.Head, M.Yamamura & S.Gal, Aqueous computing: writing on molecules,
Proceedings
of the Congress on Evolutionary Computing (CEC'99), July
6-9, 1999 (invited paper - to appear) (abstract,
dvi
or postscript).
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Using our tested method of 'writing' (cut & paste) we expect to solve
small instances of hard algorithmic problems. Our next step will be to
develop a method of 'writing' on our plasmids that will allow the solution
of large scale instances of similar problems. We plan to 'write' by attaching
short single stranded PNA molecules (P: protein backbone) to the plasmids
and to 'read' by separation based on mass of the resulting complexes. New
theoretical results on splicing and test tube computing will be written
by two Ph.D. candidates working with us.
For ~/DARPA/papers
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